The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0659
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1323789
End posion on genome 1323860
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ggtaaatttt
tRNA gene sequence 
GCCTCGGTAGGGTAGTGGACATCCTAGAAGCCTCCGGAGCTTTTGACCCGGGTTCAAGTC
CCGGCCGAGGCGctc
Downstream region at tRNA end position 
cgttttcttt
Secondary structure (Cloverleaf model)
>At0659	Arg	CCG
                   t      Gctc cgttttcttt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T G
                    T     G G C C C     A
      T G A        A      | | | | |     A
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      C A          A     TGAC
                    G + T
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTAGGGTAGTGGACATCCTAGAAGCCTCCGGAGCTTTTGACCCGGGTTCAAGTC
CCGGCCGAGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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