The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0660
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1441465
End posion on genome 1441549
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
acgcataaat
tRNA gene sequence 
GCCGGGGTAGTCTAGTCCGGTAAGGCGGTGGCCTTGAAAGCCACTGGTGCCCTGCACCTC
AAGAGTTCAAATCTCTTCCCCGGCGtcc
Downstream region at tRNA end position 
ggccccttat
Secondary structure (Cloverleaf model)
>At0660	Ser	TGA
                   t      Gtcc ggccccttat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T C T C     A
      T G A        A      | | | | |     A
    C       T C T G       A A G A G     C
    C       | | + |                 T T
    G       A G G C
      G T A        G     TGGTGCCCTGCACCTC
                    G - C
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGTCTAGTCCGGTAAGGCGGTGGCCTTGAAAGCCACTGGTGCCCTGCACCTC
AAGAGTTCAAATCTCTTCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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