The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0661
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1451410
End posion on genome 1451484
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
agagcaacgc
tRNA gene sequence 
GCTGCTATAGTGTAGACCGGCCAATCATGCGGGCCTTTCACGCCCGCGACTGGGGTTCAA
ATCCCCATAGCAGCAttc
Downstream region at tRNA end position 
gaacactgac
Secondary structure (Cloverleaf model)
>At0661	Glu	TTC
                   c      Attc gaacactgac
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A C C C C     A
    C A G A        A      | | | | |     A
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGCTATAGTGTAGACCGGCCAATCATGCGGGCCTTTCACGCCCGCGACTGGGGTTCAA
ATCCCCATAGCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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