The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0662
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1760640
End posion on genome 1760724
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
ctatacaggc
tRNA gene sequence 
GCGAGGGTAGCCAAGCCAGGTCAACGGCGCCAGGTTCAGGGCCTGGTCTCGCAGGAGTTC
TTGGGTTCGAATCCCATCCCTCGCAtct
Downstream region at tRNA end position 
ctggccatga
Secondary structure (Cloverleaf model)
>At0662	Leu	CAG
                   c      Atct ctggccatga
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T A C C C     A
    C C G A        A        | | | |     G
  A         A C C G       T T G G G     C
  G           | | |                 T T
  G         C G G C
    T C A A        G     TCTCGCAGGAGTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCCAGGTCAACGGCGCCAGGTTCAGGGCCTGGTCTCGCAGGAGTTC
TTGGGTTCGAATCCCATCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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