The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0663
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1927535
End posion on genome 1927609
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
gggcaattac
tRNA gene sequence 
GCTGCTATAGTGTAGACCGGCCAATCATGCGAGCCTCTCACGCTCGCGACAGGGGTTCAA
ATCCCCTTAGCAGCActc
Downstream region at tRNA end position 
gaacactcat
Secondary structure (Cloverleaf model)
>At0663	Glu	CTC
                   c      Actc gaacactcat
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     T C C C C     A
    C A G A        A      | | | | |     A
  C         T G T G       A G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    G - C
                    A - T
                    G - C
                    C - G
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGCTATAGTGTAGACCGGCCAATCATGCGAGCCTCTCACGCTCGCGACAGGGGTTCAA
ATCCCCTTAGCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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