The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0665
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2004798
End posion on genome 2004871
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position
ctatgaccgc
tRNA gene sequence
GGGGCCATAGGGTAGCCTGGCCATCCTAGGAGACTGGGGGTCTTCTGACTCGCGTTCAAA
TCGCGATGGCCCCAttt
Downstream region at tRNA end position
tcaattgttt
Secondary structure (Cloverleaf model)
>At0665	Pro	GGG
                   c      Attt tcaattgttt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     A - T          T A
                    T     A G C G C     A
      C G A        A      | | | | |     A
    C       T G G G       T C G C G     C
    T       | + | |                 T T
    G       A T C C
      G C C        T     CTGAC
                    A - T
                    G + T
                    G - C
                    A - T
                    G   G
                  A       G
                  C       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCATAGGGTAGCCTGGCCATCCTAGGAGACTGGGGGTCTTCTGACTCGCGTTCAAA
TCGCGATGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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