The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0666
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2038074
End posion on genome 2038144
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position
aagtactttc
tRNA gene sequence
GCGATAGTAGTCTAGCGGCAGGACAGGAGCTTCCCAAGCTTCTAACCCGGGTTCGATCCC
CGGCTATCGCAttg
Downstream region at tRNA end position
gttggtatgg
Secondary structure (Cloverleaf model)
>At0666	Gly	CCC
                   c      Attg gttggtatgg
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C          C T
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        C A        A     TAAC
                    G - C
                    G + T
                    A - T
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGATAGTAGTCTAGCGGCAGGACAGGAGCTTCCCAAGCTTCTAACCCGGGTTCGATCCC
CGGCTATCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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