The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0667
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2055703
End posion on genome 2055775
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
taattctagt
tRNA gene sequence 
GCCGGTGTGGCAGAGCGGTTAATGCCTTCGCCTGCAGAGCGAATGTCTGGGGGTCCGACT
CCCTCCGCCGGCGtcc
Downstream region at tRNA end position 
aaaacaacga
Secondary structure (Cloverleaf model)
>At0667	Cys	GCA
                   t      Gtcc aaaacaacga
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     T + G
                     G - C          T C
                    T     C T C C C     A
      C G A        G      | + | | |     G
    G       G A C G       G G G G G     C
    G         | | |                 T C
    T       A T G C
      T A          C     TGTCT
                    T - A
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGTGTGGCAGAGCGGTTAATGCCTTCGCCTGCAGAGCGAATGTCTGGGGGTCCGACT
CCCTCCGCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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