The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0668
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2346112
End posion on genome 2346185
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
taggctacgt
tRNA gene sequence 
GGGTCTGTAGCTTAGTTCGGCATAGCGGCGGACTCTTAATCCGCAGGTCAAGGGTTCAAA
TCCCTTCAGGCCCGctt
Downstream region at tRNA end position 
ttctttccat
Secondary structure (Cloverleaf model)
>At0668	Lys	CTT
                   t      Gctt ttctttccat
                     G - C
                     G - C
                     G - C
                     T + G
                     C - G
                     T - A
                     G - C          T A
                    T     T T C C C     A
      T G A        A      | | | | |     A
    T       T T C G       A A G G G     C
    C         | | |                 T T
    G       T A G C
      G C A        G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCTGTAGCTTAGTTCGGCATAGCGGCGGACTCTTAATCCGCAGGTCAAGGGTTCAAA
TCCCTTCAGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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