The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0669
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2379574
End posion on genome 2379645
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position
ataccgcact
tRNA gene sequence
GGGCTCGTAGATCAGGGGTAGATCGCTACGTTCGCAACGTAGAGGCCGCGGGTTCAAATC
CCGCCGGGTCCAtcc
Downstream region at tRNA end position
tgttttaatt
Secondary structure (Cloverleaf model)
>At0669	Ala	CGC
                   t      Atcc tgttttaatt
                     G - C
                     G - C
                     G + T
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     A
      G     C T A G       G C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    T - A
                    A - T
                    C - G
                    G - C
                  T       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGATCAGGGGTAGATCGCTACGTTCGCAACGTAGAGGCCGCGGGTTCAAATC
CCGCCGGGTCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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