The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0673
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 221325
End posion on genome 221252
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
cgatgcatgc
tRNA gene sequence 
GGGCTCGTGGTCTAGTTGGCTATGACGTCGCCTTCACACGGCGAAGATCTCGTGTTCGAA
TCACGACGGGCCCAtaa
Downstream region at tRNA end position 
gaccaagaac
Secondary structure (Cloverleaf model)
>At0673	Val	CAC
                   c      Ataa gaccaagaac
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     A G C A C     A
      T G A        G      | | | | |     G
    T       T C T G       T C G T G     C
    G         | | |                 T T
    G       T G A C
      C T A        G     AGATC
                    T - A
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGTTGGCTATGACGTCGCCTTCACACGGCGAAGATCTCGTGTTCGAA
TCACGACGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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