The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0675
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 484321
End posion on genome 484248
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
caatcctttt
tRNA gene sequence 
GGGCCCGTAGCATAGCCCGGTGGTGCGCCCGGCTGATAACCGGGAGGTCATGCGTTCGAA
TCGCATCGGGCCCAtat
Downstream region at tRNA end position 
ccttgtttta
Secondary structure (Cloverleaf model)
>At0675	Ile	GAT
                   t      Atat ccttgtttta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C G C     A
      C G A        A      | | | | |     G
    C       T A C G       A T G C G     C
    C       + | | |                 T T
    G       G T G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCATAGCCCGGTGGTGCGCCCGGCTGATAACCGGGAGGTCATGCGTTCGAA
TCGCATCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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