The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0676
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 494636
End posion on genome 494553
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tacacttttt
tRNA gene sequence 
GCTGAGGTAGTCTAGCGGTAGGGCGCAGGCCTGGAAAGCCTGTGGTGCGAAAGTGCCTCG
GGGGTTCAATTCCCCCCCTCAGCGttc
Downstream region at tRNA end position 
tgacactggg
Secondary structure (Cloverleaf model)
>At0676	Ser	GGA
                   t      Gttc tgacactggg
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T T
                    T     C C C C C     A
        G A        A      | | | | |     A
      C     T C T G       G G G G G     C
      G     + | + |                 T T
      G     G G G C
        T A        G     TGGTGCGAAAGTGCCTC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGTCTAGCGGTAGGGCGCAGGCCTGGAAAGCCTGTGGTGCGAAAGTGCCTCG
GGGGTTCAATTCCCCCCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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