The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0677
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 502265
End posion on genome 502193
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aggcagttat
tRNA gene sequence 
AGCCCGGTAGTGTAGCGGTCAATCATGCGAGACTCTGGATCTCGCGACAGCAGTTCGAAT
CTGCTCCGGGCTActc
Downstream region at tRNA end position 
ttttgttgaa
Secondary structure (Cloverleaf model)
>At0677	Gln	CTG
                   t      Actc ttttgttgaa
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T C G T C     A
      C G A        A      | | | | |     G
    G       T G T G       A G C A G     C
    G         | | +                 T T
    T       T C A T
      C A A        G     CGAC
                    C - G
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTAGTGTAGCGGTCAATCATGCGAGACTCTGGATCTCGCGACAGCAGTTCGAAT
CTGCTCCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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