The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0678
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 509768
End posion on genome 509697
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aggttgggaa
tRNA gene sequence 
GGATCCATGGGGTAGAGGATATCCTCTTGGGCTTCGAACCCAAGGACGCGGGTTCGATTC
CCGCTGGGTCCGctt
Downstream region at tRNA end position 
ttttgcccca
Secondary structure (Cloverleaf model)
>At0678	Arg	TCG
                   a      Gctt ttttgcccca
                     G - C
                     G - C
                     A - T
                     T + G
                     C - G
                     C - G
                     A - T          T T
                    T     C G C C C     A
      A G A        G      | | | | |     G
    G       T G G G       G C G G G     C
    G         | | +                 T T
    A       T C C T
      T A          C     GGAC
                    T - A
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGATCCATGGGGTAGAGGATATCCTCTTGGGCTTCGAACCCAAGGACGCGGGTTCGATTC
CCGCTGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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