The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0680
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 735064
End posion on genome 734993
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
tggttagagc
tRNA gene sequence 
GGGCTGGTGGTAAAGTGGTATTACGCTCCCTTGGCATGGGAGAGGCCGCGGGTTCAATTC
CCGCCCAGTCCAttc
Downstream region at tRNA end position 
cgcgtttttg
Secondary structure (Cloverleaf model)
>At0680	Ala	GGC
                   c      Attc cgcgtttttg
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     G - C          T T
                    T     C G C C C     A
        G A        G      | | | | |     A
      T     A A T G       G C G G G     C
      G     | | | |                 T T
      G     T T A C
        T A        G     AGGCC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGGTGGTAAAGTGGTATTACGCTCCCTTGGCATGGGAGAGGCCGCGGGTTCAATTC
CCGCCCAGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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