The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0682
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 831707
End posion on genome 831625
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
actatagggc
tRNA gene sequence 
GCGAGGGTACGAAAGTGGCCAACTCGGCTGGACTTAAGATCCAGTTCCGCAGGGATTCAT
GGGTTCGACTCCCATCCCTCGCActt
Downstream region at tRNA end position 
tttctgaagt
Secondary structure (Cloverleaf model)
>At0682	Leu	TAA
                   c      Actt tttctgaagt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T C
                    T     T A C C C     A
      T G A        A      | | | | |     G
    G       A A G C       A T G G G     C
    G         | | |                 T T
    C       C T C G
      C A A        G     TTCCGCAGGGATTC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTACGAAAGTGGCCAACTCGGCTGGACTTAAGATCCAGTTCCGCAGGGATTCAT
GGGTTCGACTCCCATCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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