The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0683
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1216813
End posion on genome 1216742
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
aaacacacac
tRNA gene sequence 
GTCCCGGTGGGGTAGTGGACATCCTAGAAGCCTGCGGAGCTTTTGACCCGGGTTCAAGTC
CCGGCCGGGGCGctt
Downstream region at tRNA end position 
cacttttcga
Secondary structure (Cloverleaf model)
>At0683	Arg	GCG
                   c      Gctt cacttttcga
                     G - C
                     T + G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G G C C C     A
      T G A        G      | | | | |     A
    G       T G G G       C C G G G     C
    G         | | +                 T T
    A       T C C T
      C A          A     TGAC
                    G + T
                    A - T
                    A - T
                    G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCCGGTGGGGTAGTGGACATCCTAGAAGCCTGCGGAGCTTTTGACCCGGGTTCAAGTC
CCGGCCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK