The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0684
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1320489
End posion on genome 1320416
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
agcatgctgt
tRNA gene sequence 
GCCTAAGTGACTCAGCCCGGCAGAGTACCTCCTTGGTAAGGAGGAAGTCGCGAGTTCAAA
TCTCGCCTTAGGCTctt
Downstream region at tRNA end position 
gtttttcttt
Secondary structure (Cloverleaf model)
>At0684	Thr	GGT
                   t      Tctt gtttttcttt
                     G - C
                     C - G
                     C - G
                     T - A
                     A - T
                     A - T
                     G - C          T A
                    T     C G C T C     A
      C G A        G      | | | | |     A
    C       C T C A       G C G A G     C
    C       | | | |                 T T
    G       G A G T
      G C A        A     AAGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTAAGTGACTCAGCCCGGCAGAGTACCTCCTTGGTAAGGAGGAAGTCGCGAGTTCAAA
TCTCGCCTTAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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