The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0685
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1393977
End posion on genome 1393893
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
gtgagaatgc
tRNA gene sequence 
GCGAGGATCGCCGAGCTTGGTCAAAGGCGCTGGATTTAGGGTCCAGTCCCGCAGGGGTTC
GCCGGTTCGAATCCGGCTCCTCGCAtat
Downstream region at tRNA end position 
ttttgcaata
Secondary structure (Cloverleaf model)
>At0685	Leu	TAG
                   c      Atat ttttgcaata
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T          T A
                    T     C G G C C     A
    T C G A        C      | | | | |     G
  T         G C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGCAGGGGTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGATCGCCGAGCTTGGTCAAAGGCGCTGGATTTAGGGTCCAGTCCCGCAGGGGTTC
GCCGGTTCGAATCCGGCTCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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