The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0686
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1862282
End posion on genome 1862210
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position
tgtatatggc
tRNA gene sequence
GCCTCAGTGGCTTAGCTGGCAGAGCGGCTGACTTGTAATCAGCAGGTCCCGTGTTCAAAT
CACGGCTGAGGCTttg
Downstream region at tRNA end position
tcgtacttct
Secondary structure (Cloverleaf model)
>At0686	Thr	TGT
                   c      Tttg tcgtacttct
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     G G C A C     A
      C G A        G      | | | | |     A
    T       T T C G       C C G T G     C
    G       + | | |                 T T
    G       G A G C
      C A          G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTGGCTTAGCTGGCAGAGCGGCTGACTTGTAATCAGCAGGTCCCGTGTTCAAAT
CACGGCTGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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