The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0689
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1899234
End posion on genome 1899129
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
taggcagtgc
tRNA gene sequence 
CCCGCCTTAACTCAGCCTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTCCGAA
TCCGGGAGGCGGGAtaa
Downstream region at tRNA end position 
actgtaccaa
Secondary structure (Cloverleaf model)
>At0689	Tyr	GTA
                   c      Ataa actgtaccaa
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G C C     A
      C G A        A      | | | | |     G
    C       C T C A       C C C G G     C
    T       | | | |                 T C
    G       G A G T
      G T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAACTCAGCCTGGTAGAGTGCGCGGCTGTAGtatggtttgccggtatcggcaa
ctgcgcggctACCGCGATGTCCCCGGTCCGAATCCGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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