The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0690
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 1923324
End posion on genome 1923250
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position
tatgagcagt
tRNA gene sequence
GGGCGAGTGGCTTAGTCCGGATAGAGCGTTAGCCTCCTAAGCTAATGGTCGGGGGTTCAA
ATCCCCCCTCGCCCGtct
Downstream region at tRNA end position
ctccggcact
Secondary structure (Cloverleaf model)
>At0690	Arg	CCT
                   t      Gtct ctccggcact
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C          T A
                    T     C C C C C     A
    C T G A        G      | | | | |     A
  C         T T C G       G G G G G     C
  G         + | | |                 T T
  G         G A G C
    A T A          G     TGGTC
                    T - A
                    T - A
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGAGTGGCTTAGTCCGGATAGAGCGTTAGCCTCCTAAGCTAATGGTCGGGGGTTCAA
ATCCCCCCTCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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