The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0691
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2002199
End posion on genome 2002126
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position 
ttactttcca
tRNA gene sequence 
GGGTTCGTAGCTCAGTTCGGTAGAGCGCCTGGCTTTTAACCAGGTGGTCGGGGGTTCAAA
TCCCTCCGGGCCCGtta
Downstream region at tRNA end position 
ccacgaccaa
Secondary structure (Cloverleaf model)
>At0691	Lys	TTT
                   a      Gtta ccacgaccaa
                     G - C
                     G - C
                     G - C
                     T + G
                     T + G
                     C - G
                     G - C          T A
                    T     C T C C C     A
      T G A        A      | + | | |     A
    T       C T C G       G G G G G     C
    C       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTCGTAGCTCAGTTCGGTAGAGCGCCTGGCTTTTAACCAGGTGGTCGGGGGTTCAAA
TCCCTCCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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