The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0692
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2123436
End posion on genome 2123366
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tgaatgtgat
tRNA gene sequence 
GCCAGGATGGCGGAAAGGCTACGCGGCTGACTGCAGATCAGCGTATCCCGGTTCGATTCC
GGGTCCTGGCTttt
Downstream region at tRNA end position 
ccgaggtata
Secondary structure (Cloverleaf model)
>At0692	Cys	GCA
                   t      Tttt ccgaggtata
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     A - T          T T
                    T     G G G C C     A
        A A        G      | | | | |     G
      A     G G C G       C C C G G     C
      G       | | |                 T T
      G     A C G C
        C T        G     GTAT
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGATGGCGGAAAGGCTACGCGGCTGACTGCAGATCAGCGTATCCCGGTTCGATTCC
GGGTCCTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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