The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0696
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2247272
End posion on genome 2247201
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ctacacggtc
tRNA gene sequence 
GCCAAGGTGGCGGAGCGGCCACGCGGTTGACTGCAGATCAACTACACTCCGGTTCAAATC
CGGACCTTGGCTtgg
Downstream region at tRNA end position 
accggtttcc
Secondary structure (Cloverleaf model)
>At0696	Cys	GCA
                   c      Ttgg accggtttcc
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     A G G C C     A
        G A        G      | | | | |     A
      C     G G C G       T C C G G     C
      G       | | |                 T T
      G     A C G C
        C C        G     TACAC
                    G - C
                    T - A
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAAGGTGGCGGAGCGGCCACGCGGTTGACTGCAGATCAACTACACTCCGGTTCAAATC
CGGACCTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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