The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0697
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2292778
End posion on genome 2292704
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gatgacaaaa
tRNA gene sequence 
GGGGTCGTGGGGTAGCCTGGACTATCCTATTGCGTTCGGGACGCAGTGACCTGAGTTCGA
ATCTCAGCGACCCCAttt
Downstream region at tRNA end position 
taataaagta
Secondary structure (Cloverleaf model)
>At0697	Pro	CGG
                   a      Attt taataaagta
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        G      | | | | |     G
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    A C T A        A     TGAC
                    T + G
                    T - A
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTGGGGTAGCCTGGACTATCCTATTGCGTTCGGGACGCAGTGACCTGAGTTCGA
ATCTCAGCGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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