The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0699
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2364235
End posion on genome 2364162
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
aggaacatct
tRNA gene sequence 
GCCAGGGTAGGGTAGTCTGGTTATCCTAAGGGGCTGTGGATCCCTCGACCCGGGTTCAAA
TCTCGGCCCTGGCCtcg
Downstream region at tRNA end position 
tttttctcct
Secondary structure (Cloverleaf model)
>At0699	His	GTG
                   t      Ctcg tttttctcct
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     G G C T C     A
    C T G A        A      | | | + |     A
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    T T A          A     CGAC
                    A - T
                    G - C
                    G - C
                    G - C
                    G + T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGGTAGGGTAGTCTGGTTATCCTAAGGGGCTGTGGATCCCTCGACCCGGGTTCAAA
TCTCGGCCCTGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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