The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0745
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 49406
End posion on genome 49490
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tagaacgcgt
tRNA gene sequence 
GTCGTGGTAGCCAAGCCTGGCCCAAGGCGCAGGGTTGCTAACTCTGTGGCGTACAGCCTC
CGGGGTTCGAATCCCCGCCACGACGctc
Downstream region at tRNA end position 
acccatcagt
Secondary structure (Cloverleaf model)
>At0745	Ser	GCT
                   t      Gctc acccatcagt
                     G - C
                     T - A
                     C - G
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         A C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C C A        G     TGGCGTACAGCCTC
                    C - G
                    A - T
                    G - C
                    G + T
                    G - C
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCGTGGTAGCCAAGCCTGGCCCAAGGCGCAGGGTTGCTAACTCTGTGGCGTACAGCCTC
CGGGGTTCGAATCCCCGCCACGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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