The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0747
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 460958
End posion on genome 461031
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
ccacccggta
tRNA gene sequence 
GGGCGTGTGGCCTAGTGGACCAGGGCGAGGGGTTCCTAACCCCTAGAACGCGGGTTCGAA
TCCCGCCACGCCCGtgc
Downstream region at tRNA end position 
agcgaccgca
Secondary structure (Cloverleaf model)
>At0747	Arg	CCT
                   a      Gtgc agcgaccgca
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     T - A
                     G - C          T A
                    T     C G C C C     A
      T G A        G      | | | | |     G
    G       T C C G       G C G G G     C
    G       + | | |                 T T
    A       G G G C
      C C A        G     AGAAC
                    A - T
                    G - C
                    G - C
                    G - C
                    G - C
                  T       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGTGTGGCCTAGTGGACCAGGGCGAGGGGTTCCTAACCCCTAGAACGCGGGTTCGAA
TCCCGCCACGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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