The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0748
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 641901
End posion on genome 641974
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
tgagtgcact
tRNA gene sequence 
GGGCCGGTAGCTCAGTCTGGCAGAGCGACGGCCTCTTAAGCCGTCGGTCGAGGGTTCAAA
TCCCTTCCGGCCCGctt
Downstream region at tRNA end position 
ttgcgacgaa
Secondary structure (Cloverleaf model)
>At0748	Lys	CTT
                   t      Gctt ttgcgacgaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        A      + | | | |     A
    C       C T C G       G A G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     CGGTC
                    A - T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGTCTGGCAGAGCGACGGCCTCTTAAGCCGTCGGTCGAGGGTTCAAA
TCCCTTCCGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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