The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0752
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 1197384
End posion on genome 1197458
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position
attgtacgta
tRNA gene sequence
GGGCGCTTAGCTCAGCTTGGACAGAGTGCTTGGCTTCGGACCAAACCGTCGGGGGTTCAA
ATCCCTCAGCGCCCGtgt
Downstream region at tRNA end position
tctgccgcga
Secondary structure (Cloverleaf model)
>At0752	Arg	TCG
                   a      Gtgt tctgccgcga
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A          T A
                    T     C T C C C     A
    T C G A        A      | + | | |     A
  T         C T C G       G G G G G     C
  G         | | | +                 T T
  G         G A G T
    A C A          G     CCGTC
                    C   A
                    T - A
                    T - A
                    G - C
                    G - C
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCTTAGCTCAGCTTGGACAGAGTGCTTGGCTTCGGACCAAACCGTCGGGGGTTCAA
ATCCCTCAGCGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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