The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0753
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 1302449
End posion on genome 1302523
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tgagtgcact
tRNA gene sequence 
GGGTTGGTGATCTAGTTCGGTTATGATACCTCCTTCACACGGAGGAAGTCGGCGGTTCGA
ATCCGCCCCAACCCActc
Downstream region at tRNA end position 
agtcgcttaa
Secondary structure (Cloverleaf model)
>At0753	Val	CAC
                   t      Actc agtcgcttaa
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     G - C
                     G - C          T A
                    T     C C G C C     A
    T T G A        G      | | | | |     G
  C         T C T A       G G C G G     C
  G           | | |                 T T
  G         T G A T
    T T A          A     AAGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTGGTGATCTAGTTCGGTTATGATACCTCCTTCACACGGAGGAAGTCGGCGGTTCGA
ATCCGCCCCAACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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