The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0754
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 1355959
End posion on genome 1356033
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
ctcgcagtga
tRNA gene sequence 
GGGTTCGTGGTCTAGGTCGGTTATGACACCTCCTTGACATGGAGGAGGCCGGCGGTTCAA
ATCCGCCCGAACCCActt
Downstream region at tRNA end position 
ctgacgacgt
Secondary structure (Cloverleaf model)
>At0754	Val	GAC
                   a      Actt ctgacgacgt
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     C - G
                     G - C          T A
                    T     C C G C C     A
    T G G A        G      | | | | |     A
  C         T C T G       G G C G G     C
  G           | | |                 T T
  G         T G A C
    T T A          A     AGGCC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTCGTGGTCTAGGTCGGTTATGACACCTCCTTGACATGGAGGAGGCCGGCGGTTCAA
ATCCGCCCGAACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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