The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0755
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 1443894
End posion on genome 1443965
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position
aacgaagcaa
tRNA gene sequence
GCGCTGGTAGTGTAGTTGGTATCACGTGACCTTGCCATGGTCACAACCTGGGTTCAAATC
CCAGCCAGCGCAttt
Downstream region at tRNA end position
cccttcatcc
Secondary structure (Cloverleaf model)
>At0755	Gly	GCC
                   a      Attt cccttcatcc
                     G - C
                     C - G
                     G - C
                     C - G
                     T - A
                     G - C
                     G - C          T A
                    T     G A C C C     A
      T G A        A      | | | | |     A
    T       T G T G       C T G G G     C
    G         | | |                 T T
    G       T C A C
      T A          G     CAAC
                    T - A
                    G - C
                    A - T
                    C - G
                    C - G
                  T       T
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCTGGTAGTGTAGTTGGTATCACGTGACCTTGCCATGGTCACAACCTGGGTTCAAATC
CCAGCCAGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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