The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0757
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2051784
End posion on genome 2051856
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
ctcgatatga
tRNA gene sequence 
GTCCGGATAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAAT
CTCCGTCCGGACGttt
Downstream region at tRNA end position 
ctctacagca
Secondary structure (Cloverleaf model)
>At0757	Arg	GCG
                   a      Gttt ctctacagca
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          T A
                    T     G C C T C     A
      T G A        A      | | | | |     A
    G       T G G G       C G G A G     C
    G         | | +                 T T
    A       T C C T
      C T A        C     GGAC
                    T + G
                    T - A
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTCCGGATAGGGTAGTGGACTATCCTCTTGGCTTGCGGAGCCAGGGACCGGAGTTCAAAT
CTCCGTCCGGACG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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