The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0761
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2220975
End posion on genome 2221045
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
actgcaacga
tRNA gene sequence 
GCGCCGGTGGTCCAGTGGTAGGACATTGCCTTCCCAAGGCAATAGCCCGGGTTCAATTCC
CGGCCGGCGCAttt
Downstream region at tRNA end position 
tgctgcgagt
Secondary structure (Cloverleaf model)
>At0761	Gly	CCC
                   a      Attt tgctgcgagt
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     C C T G       C C G G G     C
      G     | | | |                 T T
      G     G G A C
        T A        A     TAGC
                    T - A
                    T - A
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGGTGGTCCAGTGGTAGGACATTGCCTTCCCAAGGCAATAGCCCGGGTTCAATTCC
CGGCCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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