The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0762
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2436991
End posion on genome 2437095
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position
acgatatcga
tRNA gene sequence
GGGCACGTAGCTCAGTCCGGATAGAGCGTCGGACTTCTAATCCGACGGTCGTGGGTTCGA
ATCCCACCGTGCCCGtta
Downstream region at tRNA end position
tctgtaactg
Secondary structure (Cloverleaf model)
>At0762	Arg	TCT
                   a      Gtta tctgtaactg
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        A      | | | | |     G
  C         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     CGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCACGTAGCTCAGTCCGGATAGAGCGTCGGACTTCTAtctccgctggcgctgccatcg
ggggaagacATCCGACGGTCGTGGGTTCGAATCCCACCGTGCCCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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