The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0763
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2445667
End posion on genome 2445737
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
agcaagcgtg
tRNA gene sequence 
TCCGGGTTGGGGTAGTGGTATCCTTCAGCCTTGTGGTGGCTGAGACGTGGGTTCAATTCC
CGCACCCGGACtgt
Downstream region at tRNA end position 
ataaattttc
Secondary structure (Cloverleaf model)
>At0763	His	GTG
                   g      Ctgt ataaattttc
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A          T T
                    T     C G C C C     A
        G A        G      | + | | |     A
      T     T G G G       G T G G G     C
      G       | | +                 T T
      G     T C C T
        T A        T     AGAC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  T       T
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
TCCGGGTTGGGGTAGTGGTATCCTTCAGCCTTGTGGTGGCTGAGACGTGGGTTCAATTCC
CGCACCCGGAC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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