The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0764
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2456306
End posion on genome 2456378
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
agagtagtac
tRNA gene sequence 
GGGATCGTGGGGTAGCTTGGTAACCTTCGGGCCTTGGGTGCCCGCGCCCCTAGTTCAAAT
CTGGGCGATCCCAtac
Downstream region at tRNA end position 
ctgcgataac
Secondary structure (Cloverleaf model)
>At0764	Pro	TGG
                   c      Atac ctgcgataac
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     C - G
                     G - C          T A
                    T     G G G T C     A
      C G A        G      | | + | |     A
    T       T G G G       C C T A G     C
    T       | | | +                 T T
    G       A C C T
      G T A        T     CGCC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       T
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGATCGTGGGGTAGCTTGGTAACCTTCGGGCCTTGGGTGCCCGCGCCCCTAGTTCAAAT
CTGGGCGATCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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