The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0765
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2633932
End posion on genome 2634003
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cggatctgcc
tRNA gene sequence 
GGGCCCATAGCTCAGCGGGAGAGCGCCGCCTTTGCAAGGCGGAGGCCCTGGGTTCAAATC
CCAGTGGGTCCAtac
Downstream region at tRNA end position 
gacgtgcctg
Secondary structure (Cloverleaf model)
>At0765	Ala	TGC
                   c      Atac gacgtgcctg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     G A C C C     A
        G A        A      | | | | |     A
      C     C T C G       C T G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCATAGCTCAGCGGGAGAGCGCCGCCTTTGCAAGGCGGAGGCCCTGGGTTCAAATC
CCAGTGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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