The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0767
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2873004
End posion on genome 2873076
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gctatcgcac
tRNA gene sequence 
GGGCCGGTGGGGTAGCCTGGTATCCTTCGGCCTTCGGGTGGCCGTAACCGCGATTCGAAT
TCGCGCCGGCCCAttt
Downstream region at tRNA end position 
ttccaacgca
Secondary structure (Cloverleaf model)
>At0767	Pro	CGG
                   c      Attt ttccaacgca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C G C T     A
      C G A        G      | | | | |     G
    C       T G G G       C G C G A     C
    T         | | +                 T T
    G       T C C T
      G T A        T     TAAC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGGGTAGCCTGGTATCCTTCGGCCTTCGGGTGGCCGTAACCGCGATTCGAAT
TCGCGCCGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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