The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0771
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 99037
End posion on genome 98954
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
gcttgactgc
tRNA gene sequence 
GGTGGGATGGCAGAGCGGCCTATTGCGCCTGCCTTGAAAGCAGGTATCCTCACGGATTCC
TGGGTTCAAATCCCAGTCCCACCGtat
Downstream region at tRNA end position 
tttgccacga
Secondary structure (Cloverleaf model)
>At0771	Ser	TGA
                   c      Gtat tttgccacga
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G A C C C     A
      C G A        G      | | | | |     A
    G       G A C G       C T G G G     C
    G       + | | |                 T T
    C       T T G C
      C T A        G     TATCCTCACGGATTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGTGGGATGGCAGAGCGGCCTATTGCGCCTGCCTTGAAAGCAGGTATCCTCACGGATTCC
TGGGTTCAAATCCCAGTCCCACCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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