The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0772
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 475693
End posion on genome 475623
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gaagcgatga
tRNA gene sequence 
GCGGCGGTGGTCTAGTGGTAGGACCTGAGCCTTCCAAGCTCATGGCCCGGGTTCAAATCC
CGGTCGCCGCAtcc
Downstream region at tRNA end position 
tgcgaggaac
Secondary structure (Cloverleaf model)
>At0772	Gly	TCC
                   a      Atcc tgcgaggaac
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G + T          T A
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        T A        C     TGGC
                    T - A
                    G - C
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTGGTCTAGTGGTAGGACCTGAGCCTTCCAAGCTCATGGCCCGGGTTCAAATCC
CGGTCGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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