The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0774
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 709124
End posion on genome 709050
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
acttgtgtat
tRNA gene sequence 
GCTCCGTTGGTGTAGTCCGGCCAATCATATCACCCTCTCACGGTGATGACTAGGGTTCAA
ATCCCTGACGGAGCAttt
Downstream region at tRNA end position 
ctctccgatt
Secondary structure (Cloverleaf model)
>At0774	Glu	CTC
                   t      Attt ctctccgatt
                     G - C
                     C - G
                     T - A
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     G T C C C     A
    C T G A        G      + | | | |     A
  C         T G T G       T A G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        A     TGAC
                    T - A
                    C - G
                    A - T
                    C - G
                    C - G
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTCCGTTGGTGTAGTCCGGCCAATCATATCACCCTCTCACGGTGATGACTAGGGTTCAA
ATCCCTGACGGAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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