The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0776
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 921485
End posion on genome 921402
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
caatacgcgt
tRNA gene sequence 
GCGAGGGTAGCCAAGCCAGGAAACGGCGGCGGACTCAAGATCCGCTCCCGTAGGGGTCCA
AGGGTTCAAATCCCTTCCCTCGCAtcg
Downstream region at tRNA end position 
tataggggcc
Secondary structure (Cloverleaf model)
>At0776	Leu	CAA
                   t      Atcg tataggggcc
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        A      | | | | |     A
  A         A C C G       A A G G G     C
  G           | | |                 T T
  G         C G G C
    A A A          G     TCCCGTAGGGGTCC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCCAGGAAACGGCGGCGGACTCAAGATCCGCTCCCGTAGGGGTCCA
AGGGTTCAAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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