The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0788
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2237596
End posion on genome 2237513
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cgaagtacgt
tRNA gene sequence 
GCCAGAATGGCCGAATCTGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCATTTGGGATTC
TGGGTTCAAATCCCAGTTCTGGCGtag
Downstream region at tRNA end position 
cgaggttcga
Secondary structure (Cloverleaf model)
>At0788	Ser	GGA
                   t      Gtag cgaggttcga
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     A - T
                     A - T          T A
                    T     G A C C C     A
      T A A        G      | | | | |     A
    C       G C C G       C T G G G     C
    T         | | |                 T T
    G       A G G C
      G T A        G     TTCCCATTTGGGATT
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGAATGGCCGAATCTGGTAAGGCGCACGCCTGGAAAGCGTGTTCCCATTTGGGATTC
TGGGTTCAAATCCCAGTTCTGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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