The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0789
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2369936
End posion on genome 2369864
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
gagtgcacac
tRNA gene sequence 
AGTCCATTGGGGTAGTGGCCAATCCTGAAGCCTTCTGGGGGCTTCGACCCTGGTTCGAAT
CCAGGATGGACTAttt
Downstream region at tRNA end position 
ttgtggcgaa
Secondary structure (Cloverleaf model)
>At0789	Gln	CTG
                   c      Attt ttgtggcgaa
                     A - T
                     G - C
                     T - A
                     C - G
                     C - G
                     A - T
                     T - A          T A
                    T     G G A C C     A
      T G A        G      | | | | |     G
    G       T G G G       C C T G G     C
    G         | | +                 T T
    C       T C C T
      C A A        G     CGAC
                    A - T
                    A - T
                    G - C
                    C - G
                    C - G
                  T       G
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGTCCATTGGGGTAGTGGCCAATCCTGAAGCCTTCTGGGGGCTTCGACCCTGGTTCGAAT
CCAGGATGGACTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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