The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0790
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2650861
End posion on genome 2650788
Amino Acid Lys
Anticodon TTT
Upstream region at tRNA start position
cgaatagcga
tRNA gene sequence
GGGCCGGTAGCTCAGTTAGGCAGAGCGTCTGGCTTTTAACCAGATGGTCGGGGGTTCAAC
TCCCTCCCGGCCCGtgc
Downstream region at tRNA end position
aacgaaccga
Secondary structure (Cloverleaf model)
>At0790	Lys	TTT
                   a      Gtgc aacgaaccga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T C
                    T     C T C C C     A
      T G A        A      | + | | |     A
    T       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     TGGTC
                    T - A
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    T T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGTTAGGCAGAGCGTCTGGCTTTTAACCAGATGGTCGGGGGTTCAAC
TCCCTCCCGGCCCG
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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