The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0796 |
Genome ID | AE004437 |
Phylum/Class | Euryarchaeota |
Species | Halobacterium salinarum NRC-1; ATCC 700922 [AE004437] |
Start position on genome
|
191112
|
End posion on genome
|
191196
|
Amino Acid
|
Ser
|
Anticodon
|
CGA
|
Upstream region at tRNA start position
|
tatcgaacga
|
tRNA gene sequence
|
GCCGAGGTAGCCTAGCCTGGCCAAGGCGGTTGCTTCGAGAGCAACTGTCCACACGGACTC AGGAGTTCAAATCTCCTCCTCGGCGctt
|
Downstream region at tRNA end position
|
ctcggaccac
|
Secondary structure (Cloverleaf model) | >At0796 Ser CGA
a Gctt ctcggaccac
G - C
C - G
C - G
G - C
A - T
G - C
G - C T A
T T C C T C A
C C G A A | | | | | A
T T C C G A G G A G C
G | | | | T T
G A G G C
C C A G TGTCCACACGGACTC
G - C
T - A
T - A
G - C
C - G
T A
T G
C G A
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GCCGAGGTAGCCTAGCCTGGCCAAGGCGGTTGCTTCGAGAGCAACTGTCCACACGGACTC AGGAGTTCAAATCTCCTCCTCGGCG |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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